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  5. Sro1581_g283790.1

Sro1581_g283790.1 (Contig585.g7354)


Aliases : Contig585.g7354

Description : Dependent RNA helicase


Gene families : OG_01_0000947 (OrthoFinder) Phylogenetic Tree(s): OG0000947_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1581_g283790.1
Cluster HCCA: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000093.151 tig00000093_g3579.t1 DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays 0.02 OrthoFinder
Cpa|evm.model.tig00020734.25 tig00020734_g13581.t1 DEAD-box ATP-dependent RNA helicase 53, mitochondrial... 0.02 OrthoFinder
Cre02.g118300 30784864 DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.03 OrthoFinder
Cre17.g727700 30782559 DEAD-box ATP-dependent RNA helicase 3, chloroplastic... 0.02 OrthoFinder
Cz13g08080.t1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.09 OrthoFinder
Cz13g08090.t1 No alias Helicase, C-terminal; GUCT [Interproscan]. 0.07 OrthoFinder
Dusal.0202s00008.1 33191697 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.01 OrthoFinder
Dusal.0888s00003.1 33188564 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
OT_04G02790.1 No alias Helicase, C-terminal; GUCT; DEAD/DEAH box helicase... 0.08 OrthoFinder
OT_05G02140.1 No alias Helicase, C-terminal; GUCT; DEAD/DEAH box helicase... 0.05 OrthoFinder
PTI_09G04100.1 No alias GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.04 OrthoFinder
TP04G04540.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
Transcript_contig_56946 56946 Helicase, C-terminal; GUCT; DEAD/DEAH box helicase... 0.01 OrthoFinder
Vocar.0033s0039.1 32886419 DEAD/DEAH box helicase domain; Helicase, C-terminal;... 0.04 OrthoFinder
XM_002502463.1 MICPUN_58575, 58575 DEAD/DEAH box RNA helicase 0.03 OrthoFinder
XM_002507844.1 MICPUN_97749, 97749 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.05 OrthoFinder
XM_003058030.1 MicpuC2_39273, 39273 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.06 OrthoFinder
lcl|BLLF01000392.1_cds_GFH11311.1_5788 HaLaN_06792, GFH11311 DEAD box RNA helicase CiRH75 0.05 OrthoFinder
lcl|BLLF01001583.1_cds_GFH20145.1_14622 HaLaN_17222, GFH20145 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.02 OrthoFinder
lcl|BLLF01002695.1_cds_GFH25028.1_19505 HaLaN_22919, GFH25028 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.04 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59107.1_6866 PRW59107 DEAD-box ATP-dependent RNA helicase 7 0.1 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492593.1_9286 KAA8492593 Nucleolar RNA helicase 2 0.02 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491440.1_6250 KAA8491440 Nucleolar RNA helicase 2 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
BP GO:0000271 polysaccharide biosynthetic process IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0006073 cellular glucan metabolic process IEP Enrichment
BP GO:0006077 (1->6)-beta-D-glucan metabolic process IEP Enrichment
BP GO:0006078 (1->6)-beta-D-glucan biosynthetic process IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009250 glucan biosynthetic process IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044042 glucan metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0044264 cellular polysaccharide metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0051273 beta-glucan metabolic process IEP Enrichment
BP GO:0051274 beta-glucan biosynthetic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR012562 GUCT 617 700
IPR011545 DEAD/DEAH_box_helicase_dom 155 339
IPR001650 Helicase_C 424 523
No external refs found!