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  5. Sro1568_g283060.1

Sro1568_g283060.1 (Contig717.g8279)


Aliases : Contig717.g8279

Description : Helicase


Gene families : OG_01_0000030 (OrthoFinder) Phylogenetic Tree(s): OG0000030_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1568_g283060.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Sro147_g067740.1 Contig246.g2997 Helicase 0.03 OrthoFinder
Sro1532_g280230.1 Contig2041.g17536 Helicase 0.03 OrthoFinder
Sro245_g097591.1 No alias Helicase-associated [Interproscan]. 0.03 OrthoFinder
Sro351_g123860.1 Contig4381.g32940 Helicase 0.03 OrthoFinder
Sro369_g128230.1 Contig1690.g15146 Helicase 0.03 OrthoFinder
Sro529_g161100.1 Contig4737.g35132 Helicase 0.03 OrthoFinder
TP01G07410.1 No alias Hypothetical protein 0.01 OrthoFinder
TP07G05740.1 No alias Helicase-associated [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003964 RNA-directed DNA polymerase activity IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
MF GO:0008484 sulfuric ester hydrolase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR005114 Helicase_assoc 563 618
IPR005114 Helicase_assoc 141 198
IPR005114 Helicase_assoc 421 477
IPR005114 Helicase_assoc 281 338
IPR005114 Helicase_assoc 210 268
IPR005114 Helicase_assoc 632 689
IPR005114 Helicase_assoc 492 548
IPR005114 Helicase_assoc 350 408
IPR005114 Helicase_assoc 6 64
IPR005114 Helicase_assoc 75 131
No external refs found!