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  5. Sro1563_g282700.1

Sro1563_g282700.1 (Contig1017.g10180)


Aliases : Contig1017.g10180

Description : Histone H2B


Gene families : OG_01_0000102 (OrthoFinder) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1563_g282700.1
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Cre06.g264800 30779004 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g264900 30779615, HTB13 Chromatin organisation.histones.H2B-type histone 0.07 OrthoFinder
Cre06.g266750 30778405 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g271376 30780144 Chromatin organisation.histones.H2B-type histone 0.2 OrthoFinder
Cre06.g273850 30778673, HTB7 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g274250 30779155 Chromatin organisation.histones.H2B-type histone 0.06 OrthoFinder
Cre06.g275800 30778604 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g276550 30778890, HTB23 Chromatin organisation.histones.H2B-type histone 0.08 OrthoFinder
Cre06.g276900 30779728, HTB24 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cre12.g504550 30792324 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre12.g504700 30793271 Chromatin organisation.histones.H2B-type histone 0.07 OrthoFinder
Cre12.g505600 30792301, HTB17 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cre12.g506200 30793175 Chromatin organisation.histones.H2B-type histone 0.09 OrthoFinder
Cre13.g570050 30784307, HTB2 Chromatin organisation.histones.H2B-type histone 0.08 OrthoFinder
Cre13.g591200 30784473, HTB38 Chromatin organisation.histones.H2B-type histone 0.2 OrthoFinder
Cre17.g709150 30782749 Chromatin organisation.histones.H2B-type histone 0.08 OrthoFinder
Cre17.g710450 30782433 Chromatin organisation.histones.H2B-type histone 0.08 OrthoFinder
Cre17.g711750 30781954 Chromatin organisation.histones.H2B-type histone 0.07 OrthoFinder
Cre17.g714050 30782614, HTB21 Chromatin organisation.histones.H2B-type histone 0.07 OrthoFinder
Cz02g02060.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.12 OrthoFinder
Cz05g04190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.05 OrthoFinder
Cz07g08190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.06 OrthoFinder
Cz08g27120.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
Cz18g11110.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.05 OrthoFinder
PTI_06G02120.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.1 OrthoFinder
PTI_06G04930.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Sro1535_g280540.1 Contig3021.g24091 Histone H2B 0.03 OrthoFinder
Vocar.0001s0460.1 32886156 Histone H2A/H2B/H3 [Interproscan]. 0.01 OrthoFinder
Vocar.0002s0392.1 32891126 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Vocar.0016s0272.1 32898185 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Vocar.0016s0281.1 32897879 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Vocar.0027s0139.1 32887089 Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
Vocar.0028s0099.1 32895722 Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
XM_002503927.1 MICPUN_108622, 108622 Histone H2B 0.05 OrthoFinder
XM_003055466.1 MicpuC2_13212, 13212 Histone H2B 0.04 OrthoFinder
XM_003058473.1 MicpuC2_58125, 58125 Histone H2A/H2B/H3 [Interproscan]. 0.08 OrthoFinder
XM_003061989.1 MicpuC2_35705, 35705 Histone H2A/H2B/H3 [Interproscan]. 0.06 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60378.1_4501 PRW60378 Histone H2B 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW56968.1_9099 PRW56968 Histone 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57308.1_9005 PRW57308 Histone 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57429.1_9063 PRW57429 Histone 0.01 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33046.1_3813 PRW33046 Histone 0.01 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 15 93
No external refs found!