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  5. Sro155_g070300.1

Sro155_g070300.1 (Contig395.g5337)


Aliases : Contig395.g5337

Description : DExH-box ATP-dependent RNA helicase DExH17


Gene families : OG_01_0000386 (OrthoFinder) Phylogenetic Tree(s): OG0000386_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro155_g070300.1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000865.28 tig00000865_g5079.t1 DExH-box ATP-dependent RNA helicase DExH12... 0.03 OrthoFinder
Cre17.g744147 30781910 RNA processing.RNA splicing.spliceosome... 0.01 OrthoFinder
Cz03g23200.t1 No alias Brr2, N-terminal helicase PWI domain; Sec63 domain;... 0.01 OrthoFinder
Dusal.0019s00002.1 33192520 Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.02 OrthoFinder
EOD12464 No alias Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.01 OrthoFinder
EOD14868 No alias Sec63 domain; Helicase, C-terminal; DEAD/DEAH box... 0.01 OrthoFinder
EOD17849 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.04 OrthoFinder
OT_05G04190.1 No alias Sec63 domain; Helicase, C-terminal; Zinc finger,... 0.01 OrthoFinder
OT_08G02040.1 No alias Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.02 OrthoFinder
PTI_12G02760.1 No alias Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.02 OrthoFinder
Vocar.0001s0791.1 32884296 DEAD/DEAH box helicase domain; Helicase, C-terminal;... 0.03 OrthoFinder
Vocar.0039s0093.1 32897827 Brr2, N-terminal helicase PWI domain; DEAD/DEAH box... 0.01 OrthoFinder
XM_002509189.1 MICPUN_98172, 98172 Helicase, C-terminal; Brr2, N-terminal helicase PWI... 0.01 OrthoFinder
lcl|BLLF01002113.1_cds_GFH22737.1_17214 HaLaN_20249, GFH22737 Brr2, N-terminal helicase PWI domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56130.1_10381 PRW56130 U5 small nuclear ribonucleo 200 kDa helicase-like 0.01 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32955.1_3892 PRW32955 Activating signal cointegrator 1 complex subunit 3 isoform A 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 494 703
IPR004179 Sec63-dom 1057 1177
IPR001650 Helicase_C 758 895
No external refs found!