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  5. Sro1540_g280870.1

Sro1540_g280870.1 (Contig2880.g23009)


Aliases : Contig2880.g23009

Description : Coatomer subunit beta


Gene families : OG_01_0002435 (OrthoFinder) Phylogenetic Tree(s): OG0002435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1540_g280870.1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.156 tig00020553_g10647.t1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder
Cre04.g217921 30791161, COPB1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.11 OrthoFinder
Cz05g37150.t1 No alias Coatomer beta subunit, appendage platform domain;... 0.01 OrthoFinder
Dusal.0035s00026.1 33196664 Coatomer beta subunit, appendage platform domain;... 0.03 OrthoFinder
EOD12644 No alias COPB1, beta subunit of the coatomer [Ensembl]. 0.05 OrthoFinder
EOD12708 No alias COPB1, beta subunit of the coatomer [Ensembl]. 0.05 OrthoFinder
OT_04G02630.1 No alias Coatomer beta subunit, appendage platform domain;... 0.05 OrthoFinder
PTI_09G00360.1 No alias Coatomer beta subunit, C-terminal; Coatomer beta... 0.07 OrthoFinder
SymbC1.scaffold1781.8 1781.8 Malic enzyme, N-terminal domain; Clathrin/coatomer... 0.02 OrthoFinder
TP04G07120.1 No alias Clathrin/coatomer adaptor, adaptin-like, N-terminal;... 0.07 OrthoFinder
Transcript_contig_54238 54238 Coatomer beta subunit, appendage platform domain;... 0.04 OrthoFinder
Vocar.0046s0045.1 32892975 Coatomer beta subunit, appendage platform domain;... 0.03 OrthoFinder
XM_002501869.1 MICPUN_104806, 104806 Coatomer subunit beta (BCOP) 0.02 OrthoFinder
XM_003057574.1 MicpuC2_32783, 32783 Coatomer subunit beta (BCOP) 0.02 OrthoFinder
lcl|BLLF01001130.1_cds_GFH17326.1_11803 HaLaN_13936, GFH17326 Beta-coat protein 0.04 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57265.1_8886 PRW57265 Coatomer subunit beta-1 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
CC GO:0008287 protein serine/threonine phosphatase complex IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019888 protein phosphatase regulator activity IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1903293 phosphatase complex IEP Enrichment
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 27 515
IPR029446 COPB1_appendage_platform_dom 858 986
IPR011710 Coatomer_bsu_C 713 852
No external refs found!