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  5. Sro1535_g280510.1

Sro1535_g280510.1 (Contig3021.g24088)


Aliases : Contig3021.g24088

Description : Inherit from COG: Retrotransposon protein


Gene families : OG_01_0000925 (OrthoFinder) Phylogenetic Tree(s): OG0000925_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1535_g280510.1
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
Sro251_g099330.1 Contig687.g8013 Retrotransposon protein 0.06 OrthoFinder
Sro2664_g334090.1 Contig38.g226 Hypothetical protein 0.04 OrthoFinder
Sro326_g117930.1 Contig1080.g10481 Inherit from COG: Retrotransposon protein 0.04 OrthoFinder
Sro3369_g347300.1 Contig3610.g27888 Retrotransposon protein 0.07 OrthoFinder
Sro614_g175810.1 Contig1589.g14435 Retrotransposon protein 0.04 OrthoFinder
Sro704_g190250.1 Contig1755.g15586 Retrotransposon protein 0.09 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 2 50
No external refs found!