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  5. Sro1509_g278540.1

Sro1509_g278540.1 (Contig198.g2309)


Aliases : Contig198.g2309

Description : Proteasome regulatory subunit 6B


Gene families : OG_01_0002773 (OrthoFinder) Phylogenetic Tree(s): OG0002773_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1509_g278540.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.46 tig00022075_g23607.t1 26S proteasome regulatory subunit 6B homolog... 0.14 OrthoFinder
Cre09.g402450 30780718 Protein degradation.26S proteasome.regulatory... 0.26 OrthoFinder
Cz12g16250.t1 No alias ATPase, AAA-type, core; Proteasomal ATPase OB C-terminal... 0.08 OrthoFinder
EOD31689 No alias Proteasomal ATPase OB C-terminal domain; AAA ATPase,... 0.11 OrthoFinder
OT_09G02280.1 No alias Proteasomal ATPase OB C-terminal domain; ATPase,... 0.12 OrthoFinder
PTI_06G04080.1 No alias Proteasomal ATPase OB C-terminal domain; ATPase,... 0.4 OrthoFinder
TP12G01440.1 No alias Proteasomal ATPase OB C-terminal domain; ATPase,... 0.26 OrthoFinder
Transcript_contig_90026 90026 Proteasomal ATPase OB C-terminal domain; ATPase,... 0.06 OrthoFinder
Vocar.0008s0375.1 32897106 Proteasomal ATPase OB C-terminal domain; ATPase,... 0.07 OrthoFinder
XM_002502156.1 MICPUN_108299, 108299 Proteasomal ATPase OB C-terminal domain; AAA ATPase,... 0.05 OrthoFinder
XM_003059502.1 MicpuC2_27327, 27327 Proteasomal ATPase OB C-terminal domain; ATPase,... 0.1 OrthoFinder
lcl|LHPG02000010.1_cds_PRW50984.1_814 PRW50984 26S protease regulatory subunit 6B-like protein 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494538.1_3068 KAA8494538 26S protease regulatory subunit 6B-like 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0061630 ubiquitin protein ligase activity IEP Enrichment
MF GO:0061659 ubiquitin-like protein ligase activity IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 192 324
IPR032501 Prot_ATP_ID_OB 81 136
No external refs found!