Sro1506_g278310.1 (Contig3888.g29862)


Aliases : Contig3888.g29862

Description : Chloroplastic


Gene families : OG_01_0000076 (OrthoFinder) Phylogenetic Tree(s): OG0000076_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1506_g278310.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cre08.g365900 30773702, LHCSR1 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder
Cz16g02040.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
EOD03771 No alias Light-harvesting family [Ensembl]. 0.02 OrthoFinder
EOD03774 No alias Light-harvesting family [Ensembl]. 0.03 OrthoFinder
EOD06468 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD08607 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD09836 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD15375 No alias Light harvesting protein [Ensembl]. 0.03 OrthoFinder
EOD19744 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD20807 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
EOD20809 No alias Light harvesting protein [Ensembl]. 0.03 OrthoFinder
EOD25053 No alias Light-harvesting family [Ensembl]. 0.03 OrthoFinder
EOD35878 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD38541 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
PTI_01G10030.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.07 OrthoFinder
PTI_02G04020.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
PTI_04G04620.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
PTI_05G00320.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
PTI_14G03460.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
PTI_15G00600.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
PTI_15G00620.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
TP08G04750.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
TP19G02190.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
TP23G01260.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
TP23G01270.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
TP23G01280.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
XM_002506509.1 MICPUN_105009, 105009 Chlorophyll a/b-binding protein (LI818R) 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 39 199
No external refs found!