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  5. Sro1496_g277510.1

Sro1496_g277510.1 (Contig2419.g19801)


Aliases : Contig2419.g19801

Description : Splicing factor ATP-dependent RNA helicase


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1496_g277510.1
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000796.23 tig00000796_g4246.t1 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder
Cpa|evm.model.tig00000984.27 tig00000984_g6004.t1 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.01 OrthoFinder
Cre07.g349100 30774605 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder
Cre11.g467654 30775609 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder
Cz12g28100.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Cz16g14170.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Dusal.0072s00015.1 33199066 Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
Dusal.0244s00011.1 33186504 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Dusal.3054s00001.1 33200064 Helicase-associated domain [Interproscan]. 0.02 OrthoFinder
EOD29635 No alias ATP-dependent RNA helicase [Ensembl]. 0.04 OrthoFinder
OT_16G00250.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
PTI_07G01260.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.03 OrthoFinder
PTI_07G04380.1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
PTI_11G03860.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.03 OrthoFinder
Sro2910_g340090.1 Contig1382.g12705 Splicing factor ATP-dependent RNA helicase 0.04 OrthoFinder
TP01G06540.1 No alias Domain of unknown function DUF1605; S1 domain; Helicase,... 0.02 OrthoFinder
Transcript_contig_55707 55707 Helicase, C-terminal; S1 domain; DEAD/DEAH box helicase... 0.01 OrthoFinder
XM_003057993.1 MicpuC2_57106, 57106 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
XM_003057994.1 MicpuC2_57107, 57107 AAA+ ATPase domain; S1 domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
CC GO:0071203 WASH complex IEP Enrichment
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 457 561
IPR001650 Helicase_C 235 395
IPR011545 DEAD/DEAH_box_helicase_dom 36 196
IPR011709 DUF1605 635 725
No external refs found!