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  5. Sro1486_g276660.1

Sro1486_g276660.1 (Contig1746.g15552)


Aliases : Contig1746.g15552

Description : Cullin-3


Gene families : OG_01_0000229 (OrthoFinder) Phylogenetic Tree(s): OG0000229_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1486_g276660.1
Cluster HCCA: Cluster_309

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000157.110 tig00000157_g9709.t1 Cullin-4 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00020934.33 tig00020934_g16100.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cre17.g734400 30781960, CUL3 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder
Cz02g12230.t1 No alias Cullin, N-terminal [Interproscan]. 0.02 OrthoFinder
Dusal.0203s00008.1 33199265 Cullin protein, neddylation domain; Cullin, N-terminal... 0.03 OrthoFinder
Dusal.1960s00001.1 33187634 Cullin, N-terminal [Interproscan]. 0.02 OrthoFinder
EOD28450 No alias Cullin, N-terminal; Cullin protein, neddylation domain... 0.03 OrthoFinder
EOD30458 No alias Cullin, N-terminal; Cullin protein, neddylation domain... 0.02 OrthoFinder
OT_07G00170.1 No alias Cullin protein, neddylation domain; Cullin, N-terminal... 0.02 OrthoFinder
Transcript_contig_53963 53963 Cullin protein, neddylation domain; Cullin, N-terminal... 0.02 OrthoFinder
Transcript_contig_54372 54372 Cullin protein, neddylation domain; Cullin, N-terminal... 0.04 OrthoFinder
Vocar.0003s0198.1 32889269 Cullin protein, neddylation domain; Cullin, N-terminal... 0.02 OrthoFinder
Vocar.0006s0337.1 32894194 Cullin protein, neddylation domain; Cullin, N-terminal... 0.04 OrthoFinder
XM_002501559.1 MICPUN_106836, 106836 Cullin protein, neddylation domain; Cullin, N-terminal... 0.03 OrthoFinder
XM_003062494.1 MicpuC2_45869, 45869 Cullin protein, neddylation domain; Cullin, N-terminal... 0.02 OrthoFinder
lcl|BLLF01001017.1_cds_GFH16576.1_11053 HaLaN_13019, GFH16576 CULLIN_2 domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20903.1_5012 PRW20903 Cullin-1 0.02 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20452.1_5392 PRW20452 Cullin family 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
MF GO:0031625 ubiquitin protein ligase binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006621 protein retention in ER lumen IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019781 NEDD8 activating enzyme activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
BP GO:0032507 maintenance of protein location in cell IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Enrichment
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0045116 protein neddylation IEP Enrichment
BP GO:0045185 maintenance of protein location IEP Enrichment
MF GO:0046923 ER retention sequence binding IEP Enrichment
BP GO:0051235 maintenance of location IEP Enrichment
BP GO:0051651 maintenance of location in cell IEP Enrichment
MF GO:0061630 ubiquitin protein ligase activity IEP Enrichment
MF GO:0061659 ubiquitin-like protein ligase activity IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0072595 maintenance of protein localization in organelle IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001373 Cullin_N 43 645
IPR019559 Cullin_neddylation_domain 671 732
No external refs found!