1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro1425_g271500.1

Sro1425_g271500.1 (Contig1471.g13478)


Aliases : Contig1471.g13478

Description : II reaction center PSB28 protein


Gene families : OG_01_0005372 (OrthoFinder) Phylogenetic Tree(s): OG0005372_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1425_g271500.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cre10.g440450 30790206, PSB28 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder
XM_002503059.1 MICPUN_82984, 82984 Photosystem II 13kD protein, chloroplast precursor (PSBW1) 0.02 OrthoFinder
XM_003061076.1 MicpuC2_19538, 19538 Photosystem II 13kD protein, chloroplast precursor (PSBW1) 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR005610 PSII_Psb28_class-1 53 158
No external refs found!