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  5. Sro1412_g270450.1

Sro1412_g270450.1 (Contig422.g5665)


Aliases : Contig422.g5665

Description : IIIB 90 kDa subunit


Gene families : OG_01_0002221 (OrthoFinder) Phylogenetic Tree(s): OG0002221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1412_g270450.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
Cz11g09210.t1 No alias Brf1, TBP-binding domain [Interproscan]. 0.03 OrthoFinder
PTI_27G00600.1 No alias Brf1, TBP-binding domain [Interproscan]. 0.03 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493839.1_4601 KAA8493839 Transcription factor IIIB 90 kDa subunit 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0017025 TBP-class protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR013150 TFIIB_cyclin 152 222
IPR013150 TFIIB_cyclin 247 315
IPR011665 BRF1_TBP-bd_dom 579 687
IPR013137 Znf_TFIIB 65 105
No external refs found!