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  5. Sro1353_g265380.1

Sro1353_g265380.1 (Contig3065.g24430)


Aliases : Contig3065.g24430

Description : Putative U5 small nuclear ribonucleoprotein 200 kDa helicase


Gene families : OG_01_0000386 (OrthoFinder) Phylogenetic Tree(s): OG0000386_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Sro1353_g265380.1
Cluster HCCA: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold2992.1 2992.1 Sec63 domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_54253 54253 Brr2, N-terminal helicase PWI domain; Helicase,... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
MF GO:0008192 RNA guanylyltransferase activity IEP Enrichment
MF GO:0008193 tRNA guanylyltransferase activity IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0070568 guanylyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 1454 1603
IPR011545 DEAD/DEAH_box_helicase_dom 331 510
IPR004179 Sec63-dom 1770 2078
IPR004179 Sec63-dom 843 1165
IPR011545 DEAD/DEAH_box_helicase_dom 1210 1362
No external refs found!