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  5. Sro1315_g262060.1

Sro1315_g262060.1 (Contig2837.g22770)


Aliases : Contig2837.g22770

Description : Proteasome subunit alpha type-3 (Fragment)


Gene families : OG_01_0003856 (OrthoFinder) Phylogenetic Tree(s): OG0003856_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1315_g262060.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Cre14.g619550 30776161, POA7 Protein degradation.26S proteasome.20S core... 0.3 OrthoFinder
Cz03g23070.t1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.1 OrthoFinder
Dusal.0179s00015.1 33190115 Proteasome, subunit alpha/beta; Proteasome... 0.03 OrthoFinder
EOD22067 No alias Proteasome, subunit alpha/beta; Proteasome... 0.21 OrthoFinder
OT_10G03110.1 No alias Proteasome alpha-subunit, N-terminal domain; Proteasome,... 0.04 OrthoFinder
PTI_26G01000.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.32 OrthoFinder
TP01G11230.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.27 OrthoFinder
Transcript_contig_56160 56160 Proteasome alpha-subunit, N-terminal domain; Proteasome,... 0.03 OrthoFinder
Vocar.0026s0116.1 32892464 Proteasome alpha-subunit, N-terminal domain; Proteasome,... 0.05 OrthoFinder
XM_002503515.1 MICPUN_108591, 108591 Proteasome, subunit alpha/beta; Proteasome... 0.02 OrthoFinder
XM_003055523.1 MicpuC2_50364, 50364 Proteasome, subunit alpha/beta; Proteasome... 0.08 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59304.1_7323 PRW59304 20S proteasome alpha subunit G 0.09 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496150.1_2148 KAA8496150 Proteasome subunit alpha type-3 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEA Interproscan
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
CC GO:0019773 proteasome core complex, alpha-subunit complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0003779 actin binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 31 217
IPR000426 Proteasome_asu_N 8 30
No external refs found!