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  5. Sro127_g060730.1

Sro127_g060730.1 (Contig98.g1160)


Aliases : Contig98.g1160

Description : Probable histone deacetylase 1-B


Gene families : OG_01_0000505 (OrthoFinder) Phylogenetic Tree(s): OG0000505_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro127_g060730.1
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001307.15 tig00001307_g8127.t1 Chromatin organisation.histone modifications.histone... 0.01 OrthoFinder
Cre09.g387393 30780858 Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder
Cz09g16010.t1 No alias Histone deacetylase domain [Interproscan]. 0.04 OrthoFinder
Dusal.0001s00049.1 33198829 Histone deacetylase domain [Interproscan]. 0.01 OrthoFinder
Dusal.0591s00004.1 33195846 Histone deacetylase domain [Interproscan]. 0.01 OrthoFinder
OT_02G01410.1 No alias Histone deacetylase domain [Interproscan]. 0.02 OrthoFinder
OT_02G02340.1 No alias Histone deacetylase domain [Interproscan]. 0.03 OrthoFinder
TP06G03330.1 No alias Histone deacetylase domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_53973 53973 Zinc finger, GATA-type; Histone deacetylase domain... 0.01 OrthoFinder
Transcript_contig_55018 55018 Histone deacetylase domain [Interproscan]. 0.02 OrthoFinder
Vocar.0002s0433.1 32890549 Histone deacetylase domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
MF GO:0008521 acetyl-CoA transmembrane transporter activity IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
MF GO:0042887 amide transmembrane transporter activity IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0071077 adenosine 3',5'-bisphosphate transmembrane transporter activity IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 24 315
No external refs found!