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  5. Sro1269_g257860.1

Sro1269_g257860.1 (Contig3033.g24207)


Aliases : Contig3033.g24207

Description : Regulator of nonsense transcripts


Gene families : OG_01_0002867 (OrthoFinder) Phylogenetic Tree(s): OG0002867_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1269_g257860.1
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022080.18 tig00022080_g23802.t1 Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cre17.g729250 30782291, UPF2 RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder
Cz05g14090.t1 No alias Up-frameshift suppressor 2, C-terminal; MIF4G-like, type... 0.01 OrthoFinder
Dusal.0466s00002.1 33194840 MIF4G-like, type 3; Up-frameshift suppressor 2,... 0.01 OrthoFinder
EOD19187 No alias Up-frameshift suppressor 2, C-terminal [Interproscan]. 0.01 OrthoFinder
TP04G09040.1 No alias Up-frameshift suppressor 2, C-terminal; MIF4G-like, type... 0.01 OrthoFinder
Transcript_contig_56563 56563 MIF4G-like, type 3 [Interproscan]. 0.01 OrthoFinder
Vocar.0004s0357.1 32889456 MIF4G-like, type 3; Up-frameshift suppressor 2,... 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57003.1_9102 PRW57003 Regulator of nonsense transcripts UPF2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0007030 Golgi organization IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016972 thiol oxidase activity IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046486 glycerolipid metabolic process IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
InterPro domains Description Start Stop
IPR007193 Upf2/Nmd2_C 1315 1443
IPR003890 MIF4G-like_typ-3 669 844
IPR003890 MIF4G-like_typ-3 882 996
No external refs found!