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  5. Sro1231_g254630.1

Sro1231_g254630.1 (Contig4451.g33439)


Aliases : Contig4451.g33439

Description : Ras-related protein Rab


Gene families : OG_01_0000215 (OrthoFinder) Phylogenetic Tree(s): OG0000215_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1231_g254630.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001408.10 tig00001408_g8605.t1 Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder
Cpa|evm.model.tig00021127.182 tig00021127_g18866.t1 Vesicle trafficking.regulation of membrane tethering and... 0.01 OrthoFinder
Cre12.g560150 30793394 Vesicle trafficking.regulation of membrane tethering and... 0.07 OrthoFinder
Cre15.g641800 30783722 GTP-binding protein yptV2 OS=Volvox carteri 0.04 OrthoFinder
Cz04g03230.t1 No alias Small GTPase [Interproscan]. 0.02 OrthoFinder
EOD18748 No alias Ras-related protein [Ensembl]. 0.01 OrthoFinder
EOD40734 No alias Rab8, rab family GTPase [Ensembl]. 0.05 OrthoFinder
PTI_21G00160.1 No alias Small GTPase [Interproscan]. 0.02 OrthoFinder
TP05G05610.1 No alias Small GTPase [Interproscan]. 0.02 OrthoFinder
XM_002499443.1 MICPUN_90086, 90086 Ras-related gtp-binding protein 0.03 OrthoFinder
XM_003055674.1 MicpuC2_31102, 31102 Small GTPase [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01002763.1_cds_GFH25251.1_19728 HaLaN_23185, GFH25251 Small GTPase [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP Enrichment
InterPro domains Description Start Stop
IPR001806 Small_GTPase 10 170
No external refs found!