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  5. Cpa|evm.model.tig00000215.62

Cpa|evm.model.tig00000215.62 (tig00000215_g18600.t1)


Aliases : tig00000215_g18600.t1

Description : Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana


Gene families : OG_01_0003990 (OrthoFinder) Phylogenetic Tree(s): OG0003990_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000215.62
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre01.g020950 30788544 Ribosome biogenesis regulatory protein homolog... 0.02 OrthoFinder
Cz07g15250.t1 No alias Ribosomal biogenesis regulatory protein [Interproscan]. 0.02 OrthoFinder
Dusal.0009s00008.1 33190462 Ribosomal biogenesis regulatory protein [Interproscan]. 0.02 OrthoFinder
EOD32863 No alias Ribosomal biogenesis regulatory protein [Interproscan]. 0.02 OrthoFinder
OT_15G01720.1 No alias Ribosomal biogenesis regulatory protein [Interproscan]. 0.06 OrthoFinder
PTI_07G04280.1 No alias Ribosomal biogenesis regulatory protein [Interproscan]. 0.03 OrthoFinder
Sro147_g067750.1 Contig246.g2998 Biogenesis regulatory protein homolog 0.03 OrthoFinder
XM_002504986.1 MICPUN_62728, 62728 Ribosomal biogenesis regulatory protein [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007023 Ribosom_reg 25 187
No external refs found!