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  5. Sro1229_g254480.1

Sro1229_g254480.1 (Contig3654.g28212)


Aliases : Contig3654.g28212

Description : Protein ligase Arkadia


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1229_g254480.1
Cluster HCCA: Cluster_266

Target Alias Description ECC score Gene Family Method Actions
PTI_10G01940.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Sro492_g153750.1 Contig2481.g20301 Zinc ion binding 0.04 OrthoFinder
Sro524_g159890.1 Contig202.g2386 Receptor homology region, transmembrane domain- and RING... 0.03 OrthoFinder
TP02G01330.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Enrichment
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Enrichment
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP Enrichment
BP GO:0052646 alditol phosphate metabolic process IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 294 338
No external refs found!