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  5. Sro1221_g253660.1

Sro1221_g253660.1 (Contig1854.g16190)


Aliases : Contig1854.g16190

Description : 29 kDa ribonucleoprotein B, chloroplastic


Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1221_g253660.1
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold958.4 958.4 Zinc finger, CCCH-type; RNA recognition motif domain... 0.01 OrthoFinder
TP04G06190.1 No alias Hypothetical protein 0.02 OrthoFinder
lcl|BLLF01000067.1_cds_GFH06980.1_1457 HaLaN_01711, GFH06980 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01003010.1_cds_GFH26067.1_20544 HaLaN_24152, GFH26067 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01003769.1_cds_GFH28162.1_22639 HaLaN_26606, GFH28162 RRM domain-containing protein 0.01 OrthoFinder
lcl|BLLF01004115.1_cds_GFH28947.1_23424 HaLaN_27522, GFH28947 RRM domain-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006479 protein methylation IEP Enrichment
BP GO:0006480 N-terminal protein amino acid methylation IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0008213 protein alkylation IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0031365 N-terminal protein amino acid modification IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 66 136
IPR000504 RRM_dom 167 236
No external refs found!