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  5. Sro1210_g252760.1

Sro1210_g252760.1 (Contig2015.g17242)


Aliases : Contig2015.g17242

Description : Tumor susceptibility gene 101 protein


Gene families : OG_01_0002749 (OrthoFinder) Phylogenetic Tree(s): OG0002749_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1210_g252760.1
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021374.12 tig00021374_g21095.t1 No description available 0.08 OrthoFinder
Cpa|evm.model.tig00021374.13 tig00021374_g21096.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00021374.14 tig00021374_g21096.t1 No description available 0.03 OrthoFinder
Cre07.g351050 30774662, VPS23 Protein ELC OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz02g29030.t1 No alias Ubiquitin E2 variant, N-terminal; Steadiness box (SB)... 0.03 OrthoFinder
PTI_23G01220.1 No alias Steadiness box (SB) domain; Ubiquitin E2 variant,... 0.02 OrthoFinder
TP07G06820.1 No alias Ubiquitin E2 variant, N-terminal; Steadiness box (SB)... 0.02 OrthoFinder
Transcript_contig_53739 53739 Ubiquitin E2 variant, N-terminal [Interproscan]. 0.01 OrthoFinder
XM_003055817.1 MicpuC2_55060, 55060 Steadiness box (SB) domain; Ubiquitin E2 variant,... 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006464 cellular protein modification process IEA Interproscan
BP GO:0015031 protein transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000786 nucleosome IEP Enrichment
CC GO:0000813 ESCRT I complex IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
InterPro domains Description Start Stop
IPR017916 SB_dom 336 398
IPR008883 UEV_N 39 147
No external refs found!