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  5. Sro11_g008890.1

Sro11_g008890.1 (Contig724.g8363)


Aliases : Contig724.g8363

Description : Putative vacuolar protein sorting-associated protein 13A


Gene families : OG_01_0010565 (OrthoFinder) Phylogenetic Tree(s): OG0010565_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Sro11_g008890.1
Cluster HCCA: Cluster_299

Target Alias Description ECC score Gene Family Method Actions
PTI_02G05960.1 No alias Vacuolar protein sorting-associated protein 13, second... 0.06 OrthoFinder
PTI_02G05970.1 No alias Hypothetical protein 0.11 OrthoFinder
TP17G01590.1 No alias Vacuolar protein sorting-associated protein 13, second... 0.03 OrthoFinder
TP17G01780.1 No alias Vacuolar protein sorting-associated protein 13, second... 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP Enrichment
BP GO:0000725 recombinational repair IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0043531 ADP binding IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
InterPro domains Description Start Stop
IPR031642 VPS13_mid_rpt 720 868
IPR031646 VPS13_N2 169 392
IPR026854 VPS13-like_N 6 118
No external refs found!