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  5. Sro117_g057280.1

Sro117_g057280.1 (Contig3937.g30172)


Aliases : Contig3937.g30172

Description : Protein ligase Arkadia


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro117_g057280.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
PTI_04G03910.1 No alias Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
PTI_15G03630.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
TP03G04320.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
TP05G03820.1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
Vocar.0006s0216.1 32894307 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499741.1_8694 KAA8499741 E3 ubiquitin-protein ligase 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496988.1_717 KAA8496988 E3 ubiquitin-protein ligase 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495830.1_1828 KAA8495830 Putative E3 ubiquitin-protein ligase RHC1A 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492818.1_2554 KAA8492818 RING finger protein 24 0.01 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492115.1_5298 KAA8492115 E3 ubiquitin-protein ligase SDIR1 0.02 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490863.1_5635 KAA8490863 E3 ubiquitin-protein ligase SDIR1 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 282 324
No external refs found!