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  5. Sro1179_g249570.1

Sro1179_g249570.1 (Contig1870.g16342)


Aliases : Contig1870.g16342

Description : Integrase, catalytic domain [Interproscan].


Gene families : OG_01_0004747 (OrthoFinder) Phylogenetic Tree(s): OG0004747_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1179_g249570.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
Sro1179_g249560.1 Contig1870.g16341 Hypothetical protein 0.05 OrthoFinder
Sro1192_g251000.1 Contig331.g4396 Integrase, catalytic domain [Interproscan]. 0.08 OrthoFinder
Sro170_g075500.1 Contig2525.g20623 Hypothetical protein 0.05 OrthoFinder
Sro35_g022230.1 Contig3323.g26100 Integrase, catalytic domain [Interproscan]. 0.03 OrthoFinder
Sro3890_g351730.1 Contig1160.g11078 Hypothetical protein 0.06 OrthoFinder
Sro407_g136570.1 Contig2478.g20248 Hypothetical protein 0.03 OrthoFinder
Sro4699_g354490.1 Contig2139.g18000 Hypothetical protein 0.12 OrthoFinder
Sro820_g207250.1 Contig34.g207 Hypothetical protein 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002104 Integrase_catalytic 16 80
No external refs found!