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  5. Sro1172_g248930.1

Sro1172_g248930.1 (Contig1295.g12030)


Aliases : Contig1295.g12030

Description : Hypothetical protein


Gene families : OG_01_0000121 (OrthoFinder) Phylogenetic Tree(s): OG0000121_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1172_g248930.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Sro1026_g232840.1 Contig4072.g31220 Hypothetical protein 0.07 OrthoFinder
Sro1045_g234990.1 Contig324.g4308 Hypothetical protein 0.05 OrthoFinder
Sro1340_g264410.1 Contig1391.g12823 Hypothetical protein 0.06 OrthoFinder
Sro1587_g284220.1 Contig878.g9432 Retrotransposon protein 0.08 OrthoFinder
Sro160_g072320.1 Contig2985.g23728 Hypothetical protein 0.06 OrthoFinder
Sro1687_g291190.1 Contig3941.g30218 Retrotransposon protein 0.04 OrthoFinder
Sro1696_g291850.1 Contig219.g2593 Hypothetical protein 0.06 OrthoFinder
Sro1966_g308300.1 Contig1903.g16494 Hypothetical protein 0.1 OrthoFinder
Sro2081_g313760.1 Contig563.g7156 Retrotransposon protein 0.04 OrthoFinder
Sro2157_g316910.1 Contig1177.g11216 Hypothetical protein 0.05 OrthoFinder
Sro2183_g318040.1 Contig2199.g18315 Hypothetical protein 0.04 OrthoFinder
Sro2313_g322880.1 Contig2128.g17959 Retrotransposon protein 0.03 OrthoFinder
Sro2626_g332960.1 Contig2818.g22596 Retrotransposon protein 0.05 OrthoFinder
Sro2710_g335230.1 Contig3750.g28727 Hypothetical protein 0.08 OrthoFinder
Sro2710_g335240.1 Contig3750.g28728 Hypothetical protein 0.04 OrthoFinder
Sro2710_g335250.1 Contig3750.g28729 Hypothetical protein 0.07 OrthoFinder
Sro2815_g337740.1 Contig4348.g32793 Retrotransposon protein 0.07 OrthoFinder
Sro2892_g339610.1 Contig1119.g10716 Hypothetical protein 0.09 OrthoFinder
Sro291_g109520.1 Contig4055.g31098 Hypothetical protein 0.07 OrthoFinder
Sro3174_g344760.1 Contig2888.g23045 Retrotransposon protein 0.04 OrthoFinder
Sro3304_g346470.1 Contig606.g7512 Hypothetical protein 0.02 OrthoFinder
Sro3381_g347460.1 Contig1231.g11558 Hypothetical protein 0.04 OrthoFinder
Sro4143_g353160.1 Contig1243.g11621 Hypothetical protein 0.06 OrthoFinder
Sro476_g150560.1 Contig4641.g34588 Hypothetical protein 0.04 OrthoFinder
Sro494_g154220.1 Contig3119.g24787 Hypothetical protein 0.03 OrthoFinder
Sro494_g154230.1 Contig3119.g24788 Retrotransposon protein 0.04 OrthoFinder
Sro49_g028630.1 Contig2054.g17613 Retrotransposon protein 0.06 OrthoFinder
Sro66_g037090.1 Contig399.g5379 Retrotransposon protein 0.03 OrthoFinder
Sro66_g037110.1 Contig399.g5381 Hypothetical protein 0.04 OrthoFinder
Sro730_g193960.1 Contig80.g828 Hypothetical protein 0.05 OrthoFinder
Sro749_g196740.1 Contig2460.g20131 Hypothetical protein 0.04 OrthoFinder
Sro833_g208530.1 Contig120.g1359 Retrotransposon protein 0.06 OrthoFinder
Sro833_g208550.1 Contig120.g1361 Retrotransposon protein 0.04 OrthoFinder
Sro833_g208560.1 Contig120.g1362 Retrotransposon protein 0.08 OrthoFinder
Sro924_g220810.1 Contig112.g1263 Hypothetical protein 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment

No InterPro domains available for this sequence

No external refs found!