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  5. Sro1170_g248780.1

Sro1170_g248780.1 (Contig3531.g27307)


Aliases : Contig3531.g27307

Description : Protein ClpB


Gene families : OG_01_0000068 (OrthoFinder) Phylogenetic Tree(s): OG0000068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1170_g248780.1
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
Cre10.g465550 30790230, CLPD1 Chaperone protein ClpB2, chloroplastic OS=Oryza sativa... 0.02 OrthoFinder
Cz09g26150.t1 No alias Clp ATPase, C-terminal; ATPase, AAA-type, core;... 0.02 OrthoFinder
Cz16g16110.t1 No alias ATPase, AAA-type, core; Clp, N-terminal; ClpA/ClpB, AAA... 0.02 OrthoFinder
Dusal.0088s00005.1 33203559 ATPase, AAA-type, core; ClpA/ClpB, AAA lid domain [Interproscan]. 0.01 OrthoFinder
EOD28025 No alias Clp ATPase, C-terminal [Interproscan]. 0.02 OrthoFinder
OT_05G04800.1 No alias Clp ATPase, C-terminal; ClpA/ClpB, AAA lid domain;... 0.01 OrthoFinder
PTI_03G05300.1 No alias ClpA/ClpB, AAA lid domain; Clp, N-terminal; ATPase,... 0.09 OrthoFinder
PTI_04G03480.1 No alias ClpA/ClpB, AAA lid domain; ATPase, AAA-type, core; Clp... 0.09 OrthoFinder
PTI_17G01580.1 No alias ClpA/ClpB, AAA lid domain; Clp, N-terminal; ATPase,... 0.02 OrthoFinder
SymbC1.scaffold1.256 1.256 Beta propeller domain-containing family; Dockerin type I... 0.01 OrthoFinder
TP09G00210.1 No alias ATPase, AAA-type, core; Clp ATPase, C-terminal;... 0.06 OrthoFinder
TP22G00720.1 No alias ATPase, AAA-type, core; Clp ATPase, C-terminal;... 0.07 OrthoFinder
Vocar.0009s0368.1 32893246 Orc1-like, AAA ATPase domain; ClpA/ClpB, AAA lid domain;... 0.02 OrthoFinder
Vocar.0034s0036.1 32893002 ClpA/ClpB, AAA lid domain; ATPase, AAA-type, core; Clp... 0.01 OrthoFinder
lcl|BLLF01000357.1_cds_GFH10899.1_5376 HaLaN_06299, GFH10899 Hypothetical protein 0.01 OrthoFinder
lcl|BLLF01003895.1_cds_GFH28479.1_22956 HaLaN_26979, GFH28479 UVR domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56139.1_10253 PRW56139 Chaperone 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 292 405
IPR041546 ClpA/ClpB_AAA_lid 431 523
IPR004176 Clp_R_dom 184 232
IPR004176 Clp_R_dom 130 155
IPR019489 Clp_ATPase_C 869 949
IPR003959 ATPase_AAA_core 696 862
No external refs found!