1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro1170_g248760.1

Sro1170_g248760.1 (Contig3531.g27305)


Aliases : Contig3531.g27305

Description : Protein L21


Gene families : OG_01_0001206 (OrthoFinder) Phylogenetic Tree(s): OG0001206_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1170_g248760.1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
Cre06.g299000 30778575, PRPL21 50S ribosomal protein L21, chloroplastic OS=Staurastrum... 0.1 OrthoFinder
Cre09.g388550 30780235, MRPL21 No description available 0.08 OrthoFinder
Cz06g02080.t1 No alias Ribosomal protein L21-like [Interproscan]. 0.01 OrthoFinder
Cz10g19180.t1 No alias Ribosomal protein L21-like [Interproscan]. 0.08 OrthoFinder
Cz10g19190.t1 No alias Hypothetical protein 0.07 OrthoFinder
Dusal.0098s00017.1 33203615 Ribosomal protein L21-like [Interproscan]. 0.04 OrthoFinder
EOD41180 No alias Ribosomal protein L21-like [Interproscan]. 0.02 OrthoFinder
OT_01G04440.1 No alias Ribosomal protein L21-like [Interproscan]. 0.03 OrthoFinder
OT_07G01800.1 No alias Ribosomal protein L21-like [Interproscan]. 0.07 OrthoFinder
Sro51_chlor_g029900.1 Rpl21 Rpl21 0.04 OrthoFinder
TPCG01970.1 No alias Ribosomal protein L21-like [Interproscan]. 0.03 OrthoFinder
TPCG03020.1 No alias Ribosomal protein L21-like [Interproscan]. 0.03 OrthoFinder
Vocar.0001s0246.1 32884851 Ribosomal protein L21-like [Interproscan]. 0.03 OrthoFinder
XM_002500115.1 MICPUN_89975, 89975 Ribosomal protein L21 0.07 OrthoFinder
XM_003058097.1 MicpuC2_47061, 47061 Ribosomal protein L21-like [Interproscan]. 0.06 OrthoFinder
XM_003062473.1 MicpuC2_51973, 51973 Ribosomal L21 protein, chloroplast precursor 0.03 OrthoFinder
lcl|BLLF01004819.1_cds_GFH30299.1_24776 HaLaN_29126, GFH30299 Plastid/chloroplast ribosomal protein L21 0.04 OrthoFinder
lcl|BLLF01006389.1_cds_GFH32203.1_26680 HaLaN_31385, GFH32203 Plastid/chloroplast ribosomal protein L21 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61049.1_51 PRW61049 50S ribosomal L21 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61400.1_682 PRW61400 Ribosomal L21 0.03 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492478.1_9171 KAA8492478 50S ribosomal protein L21 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005840 ribosome IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
CC GO:0000313 organellar ribosome IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005761 mitochondrial ribosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006188 IMP biosynthetic process IEP Enrichment
BP GO:0006189 'de novo' IMP biosynthetic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046040 IMP metabolic process IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR028909 L21p-like 145 248
No external refs found!