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Aliases : Contig4710.g35031
Description : Chloroplastic
Gene families : OG_01_0000076 (OrthoFinder) Phylogenetic Tree(s): OG0000076_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sro1151_g246800.1 | |
| Cluster | HCCA: Cluster_108 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| EOD03774 | No alias | Light-harvesting family [Ensembl]. | 0.01 | OrthoFinder | |
| EOD07752 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.17 | OrthoFinder | |
| EOD08157 | No alias | Light harvesting protein [Ensembl]. | 0.18 | OrthoFinder | |
| EOD18950 | No alias | Light harvesting protein [Ensembl]. | 0.18 | OrthoFinder | |
| EOD20809 | No alias | Light harvesting protein [Ensembl]. | 0.01 | OrthoFinder | |
| EOD23225 | No alias | Light harvesting protein [Ensembl]. | 0.02 | OrthoFinder | |
| EOD24660 | No alias | Light harvesting protein [Ensembl]. | 0.18 | OrthoFinder | |
| EOD25560 | No alias | Light harvesting protein [Ensembl]. | 0.02 | OrthoFinder | |
| EOD26056 | No alias | Light harvesting protein [Ensembl]. | 0.14 | OrthoFinder | |
| EOD33861 | No alias | Light harvesting protein [Ensembl]. | 0.12 | OrthoFinder | |
| EOD38541 | No alias | Light harvesting protein [Ensembl]. | 0.01 | OrthoFinder | |
| OT_05G01810.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_02G04020.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.24 | OrthoFinder | |
| PTI_04G04620.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.24 | OrthoFinder | |
| PTI_07G04400.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_15G00600.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.25 | OrthoFinder | |
| PTI_15G00620.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.21 | OrthoFinder | |
| SymbC1.scaffold3903.3 | 3903.3 | Chlorophyll A-B binding protein [Interproscan]. | 0.01 | OrthoFinder | |
| TP05G03540.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.29 | OrthoFinder | |
| TP09G03710.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.29 | OrthoFinder | |
| TP18G01450.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.28 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8498066.1_7019 | KAA8498066 | Chlorophyll a-b binding protein of LHCII type III, chloroplastic | 0.02 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8499797.1_8750 | KAA8499797 | Chlorophyll a-b binding protein 1B-21, chloroplastic | 0.02 | OrthoFinder | |
| lcl|VRMN01000002.1_cds_KAA8496609.1_338 | KAA8496609 | Chlorophyll a-b binding protein, chloroplastic | 0.06 | OrthoFinder | |
| lcl|VRMN01000005.1_cds_KAA8493980.1_3844 | KAA8493980 | Chlorophyll a-b binding protein 1B-21, chloroplastic | 0.02 | OrthoFinder | |
| lcl|VRMN01000009.1_cds_KAA8492420.1_9113 | KAA8492420 | Chlorophyll a-b binding protein 1B-21, chloroplastic | 0.02 | OrthoFinder | |
| lcl|VRMN01000013.1_cds_KAA8491490.1_6300 | KAA8491490 | Fucoxanthin-chlorophyll a-c binding protein, chloroplastic | 0.06 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004427 | inorganic diphosphatase activity | IEP | Enrichment |
| MF | GO:0008942 | nitrite reductase [NAD(P)H] activity | IEP | Enrichment |
| CC | GO:0009521 | photosystem | IEP | Enrichment |
| CC | GO:0009523 | photosystem II | IEP | Enrichment |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Enrichment |
| MF | GO:0009678 | pyrophosphate hydrolysis-driven proton transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0010024 | phytochromobilin biosynthetic process | IEP | Enrichment |
| BP | GO:0010109 | regulation of photosynthesis | IEP | Enrichment |
| BP | GO:0010207 | photosystem II assembly | IEP | Enrichment |
| MF | GO:0010242 | oxygen evolving activity | IEP | Enrichment |
| BP | GO:0015979 | photosynthesis | IEP | Enrichment |
| MF | GO:0016636 | oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor | IEP | Enrichment |
| MF | GO:0016661 | oxidoreductase activity, acting on other nitrogenous compounds as donors | IEP | Enrichment |
| BP | GO:0019684 | photosynthesis, light reaction | IEP | Enrichment |
| CC | GO:0019898 | extrinsic component of membrane | IEP | Enrichment |
| BP | GO:0042548 | regulation of photosynthesis, light reaction | IEP | Enrichment |
| BP | GO:0042549 | photosystem II stabilization | IEP | Enrichment |
| BP | GO:0043467 | regulation of generation of precursor metabolites and energy | IEP | Enrichment |
| MF | GO:0046857 | oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor | IEP | Enrichment |
| MF | GO:0050897 | cobalt ion binding | IEP | Enrichment |
| BP | GO:0051202 | phytochromobilin metabolic process | IEP | Enrichment |
| CC | GO:0098796 | membrane protein complex | IEP | Enrichment |
| MF | GO:0098809 | nitrite reductase activity | IEP | Enrichment |
| CC | GO:1902494 | catalytic complex | IEP | Enrichment |
| CC | GO:1990204 | oxidoreductase complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 51 | 192 |
| No external refs found! |