Sro114_g056340.1 (Contig1482.g13534)

Aliases : Contig1482.g13534

Description : Dihydrouridine(20/20a) synthase

Gene families : OG_01_0001084 (OrthoFinder) Phylogenetic Tree(s): OG0001084_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro114_g056340.1
Cluster	HCCA: Cluster_294

Target	Alias	Description	ECC score	Gene Family Method	Actions
PTI_32G00190.1	No alias	tRNA-dihydrouridine synthase [Interproscan].	0.02	OrthoFinder
XM_002508206.1	MICPUN_84205, 84205	tRNA-dihydrouridine synthase [Interproscan].	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	None	Extended
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEA	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0050660	flavin adenine dinucleotide binding	IEA	Interproscan
BP	GO:0055114	obsolete oxidation-reduction process	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003678	DNA helicase activity	IEP	Enrichment
MF	GO:0004386	helicase activity	IEP	Enrichment
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Enrichment
CC	GO:0005783	endoplasmic reticulum	IEP	Enrichment
BP	GO:0006457	protein folding	IEP	Enrichment
BP	GO:0006486	protein glycosylation	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Enrichment
MF	GO:0008170	N-methyltransferase activity	IEP	Enrichment
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Enrichment
MF	GO:0008276	protein methyltransferase activity	IEP	Enrichment
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Enrichment
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Enrichment
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Enrichment
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Enrichment
BP	GO:0016311	dephosphorylation	IEP	Enrichment
MF	GO:0016758	hexosyltransferase activity	IEP	Enrichment
MF	GO:0016791	phosphatase activity	IEP	Enrichment
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Enrichment
MF	GO:0019842	vitamin binding	IEP	Enrichment
MF	GO:0030170	pyridoxal phosphate binding	IEP	Enrichment
MF	GO:0042054	histone methyltransferase activity	IEP	Enrichment
BP	GO:0043413	macromolecule glycosylation	IEP	Enrichment
MF	GO:0051082	unfolded protein binding	IEP	Enrichment
BP	GO:0070085	glycosylation	IEP	Enrichment
MF	GO:0070279	vitamin B6 binding	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001269	DUS_fam	65	429

External Links

No external refs found!

Sro114_g056340.1 (Contig1482.g13534)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation