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  5. Sro1136_g245250.1

Sro1136_g245250.1 (Contig1812.g15977)


Aliases : Contig1812.g15977

Description : Protein sorting-associated protein 28 homolog


Gene families : OG_01_0003874 (OrthoFinder) Phylogenetic Tree(s): OG0003874_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1136_g245250.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020850.3 tig00020850_g14673.t1 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.05 OrthoFinder
Cre16.g678100 30777253, VPS28 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.03 OrthoFinder
OT_01G04480.1 No alias Vacuolar protein sorting-associated Vps28 [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001908.1_cds_GFH21799.1_16276 HaLaN_19167, GFH21799 Vacuolar protein sorting-associated protein 28 homolog 0.01 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEA Interproscan
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR007143 Vps28 31 212
No external refs found!