1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro111_g055400.1

Sro111_g055400.1 (Contig567.g7217)


Aliases : Contig567.g7217

Description : Periplasmic serine endoprotease DegP


Gene families : OG_01_0000099 (OrthoFinder) Phylogenetic Tree(s): OG0000099_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro111_g055400.1
Cluster HCCA: Cluster_331

Target Alias Description ECC score Gene Family Method Actions
Cre12.g498500 30793568, DEG11 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder
Cz04g08050.t1 No alias Trypsin-like peptidase domain; PDZ domain [Interproscan]. 0.01 OrthoFinder
OT_01G05040.1 No alias PDZ domain; Trypsin-like peptidase domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_53695 53695 Trypsin-like peptidase domain [Interproscan]. 0.01 OrthoFinder
UNPLg00370.t1 No alias Trypsin-like peptidase domain; PDZ domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
MF GO:0008990 rRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
InterPro domains Description Start Stop
IPR001478 PDZ 732 829
No external refs found!