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  5. Sro1093_g240360.1

Sro1093_g240360.1 (Contig384.g5162)


Aliases : Contig384.g5162

Description : 40S ribosomal protein S30


Gene families : OG_01_0004587 (OrthoFinder) Phylogenetic Tree(s): OG0004587_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1093_g240360.1
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001003.33 tig00001003_g6288.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.32 OrthoFinder
Cre16.g666301 30777782, RPS30 Protein biosynthesis.cytosolic ribosome.small subunit... 0.46 OrthoFinder
Cz03g18060.t1 No alias Ribosomal protein S30 [Interproscan]. 0.03 OrthoFinder
EOD14554 No alias Ribosomal protein S30 [Interproscan]. 0.06 OrthoFinder
EOD23777 No alias Ribosomal protein S30 [Interproscan]. 0.06 OrthoFinder
OT_08G00570.1 No alias Ribosomal protein S30 [Interproscan]. 0.15 OrthoFinder
PTI_04G04400.1 No alias Ribosomal protein S30 [Interproscan]. 0.44 OrthoFinder
SymbC1.scaffold1197.1 1197.1 Ribosomal protein S30 [Interproscan]. 0.03 OrthoFinder
TP01G05720.1 No alias Ribosomal protein S30 [Interproscan]. 0.08 OrthoFinder
Vocar.0066s0009.1 32891752 Ribosomal protein S30 [Interproscan]. 0.07 OrthoFinder
XM_002502986.1 MICPUN_59642, 59642 Ribosomal protein S30; Ribosomal protein S15 [Interproscan]. 0.46 OrthoFinder
XM_003058671.1 MicpuC2_57777, 57777 Ribosomal protein 0.15 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR006846 Ribosomal_S30 41 89
No external refs found!