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  5. Sro106_g053630.1

Sro106_g053630.1 (Contig1122.g10760)


Aliases : Contig1122.g10760

Description : Strawberry notch homolog 2


Gene families : OG_01_0000467 (OrthoFinder) Phylogenetic Tree(s): OG0000467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro106_g053630.1
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
Cre01.g053250 30789240 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cre07.g350100 30774786 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz08g14040.t1 No alias Strawberry notch, helicase C domain;... 0.02 OrthoFinder
Dusal.0166s00009.1 33188727 Strawberry notch, AAA domain [Interproscan]. 0.02 OrthoFinder
Dusal.0695s00005.1 33201554 Strawberry notch, helicase C domain; Strawberry notch,... 0.03 OrthoFinder
Dusal.1045s00001.1 33196253 Strawberry notch, helicase C domain [Interproscan]. 0.02 OrthoFinder
Dusal.1045s00002.1 33196252 Strawberry notch, AAA domain [Interproscan]. 0.02 OrthoFinder
EOD10242 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.05 OrthoFinder
EOD16011 No alias Strawberry notch, helicase C domain [Interproscan]. 0.07 OrthoFinder
EOD16012 No alias Strawberry notch, AAA domain [Interproscan]. 0.04 OrthoFinder
EOD31137 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.02 OrthoFinder
EOD41135 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.04 OrthoFinder
OT_03G05510.1 No alias Strawberry notch, helicase C domain; Strawberry notch,... 0.06 OrthoFinder
SymbC1.scaffold1174.5 1174.5 Strawberry notch, helicase C domain [Interproscan]. 0.02 OrthoFinder
TP02G01100.1 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.03 OrthoFinder
Transcript_contig_55863 55863 Strawberry notch, helicase C domain; Strawberry notch,... 0.02 OrthoFinder
Transcript_contig_78647 78647 Strawberry notch, AAA domain [Interproscan]. 0.01 OrthoFinder
Vocar.0001s0130.1 32884628 Strawberry notch, AAA domain; Strawberry notch, helicase... 0.03 OrthoFinder
XM_002503038.1 MICPUN_94381, 94381 Strawberry notch, AAA domain; Strawberry notch, helicase... 0.02 OrthoFinder
lcl|BLLF01001655.1_cds_GFH20545.1_15022 HaLaN_17686, GFH20545 PHD-type domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58082.1_8009 PRW58082 Strawberry notch-like protein 1-like 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000444 MIS12/MIND type complex IEP Enrichment
CC GO:0000818 nuclear MIS12/MIND complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR026937 SBNO_Helicase_C_dom 587 897
IPR039187 SNO_AAA 85 401
No external refs found!