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  5. Sro103_g052500.1

Sro103_g052500.1 (Contig308.g4047)


Aliases : Contig308.g4047

Description : B-type cyclin


Gene families : OG_01_0000476 (OrthoFinder) Phylogenetic Tree(s): OG0000476_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro103_g052500.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000769.38 tig00000769_g4035.t1 Cell cycle.regulation.cyclins.CYCB-type cyclin 0.02 OrthoFinder
Cre08.g370401 30773725 Cyclin-B2-2 OS=Arabidopsis thaliana 0.02 OrthoFinder
EOD13446 No alias Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. 0.02 OrthoFinder
OT_01G06190.1 No alias Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. 0.02 OrthoFinder
PTI_09G03600.1 No alias Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. 0.02 OrthoFinder
PTI_33G00170.1 No alias Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. 0.04 OrthoFinder
TP04G05450.1 No alias Cyclin, N-terminal; Cyclin, C-terminal domain [Interproscan]. 0.02 OrthoFinder
TP10G00850.1 No alias Cyclin, N-terminal; Cyclin, C-terminal domain [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56788.1_9556 PRW56788 B-type cyclin isoform B 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495714.1_1712 KAA8495714 G2/mitotic-specific cyclin-A 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492954.1_2690 KAA8492954 Cyclin-B2-2 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR006671 Cyclin_N 191 315
IPR004367 Cyclin_C-dom 321 429
No external refs found!