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  5. Sro1027_g232980.1

Sro1027_g232980.1 (Contig109.g1249)


Aliases : Contig109.g1249

Description : Transducin beta-like protein 3


Gene families : OG_01_0000612 (OrthoFinder) Phylogenetic Tree(s): OG0000612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1027_g232980.1
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000704.61 tig00000704_g3346.t2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder
Cpa|evm.model.tig00000704.62 tig00000704_g3346.t2 No description available 0.04 OrthoFinder
Cre07.g344050 30774587 Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 OrthoFinder
Cz04g09230.t1 No alias WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. 0.09 OrthoFinder
EOD29254 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.06 OrthoFinder
OT_08G01420.1 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.06 OrthoFinder
PTI_06G04180.1 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.16 OrthoFinder
TP04G06150.1 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.04 OrthoFinder
Transcript_contig_57084 57084 Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.03 OrthoFinder
Vocar.0011s0002.1 32895390 WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. 0.06 OrthoFinder
XM_002503015.1 MICPUN_83206, 83206 WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. 0.09 OrthoFinder
XM_003058642.1 MicpuC2_518, 518 Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.07 OrthoFinder
lcl|BLLF01000847.1_cds_GFH15415.1_9892 HaLaN_11639, GFH15415 WD_REPEATS_REGION domain-containing protein 0.02 OrthoFinder
lcl|BLLF01003674.1_cds_GFH27926.1_22403 HaLaN_26320, GFH27926 Thioredoxin domain-containing protein 0.01 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493381.1_9682 KAA8493381 Transducin beta-like protein 3 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0032040 small-subunit processome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006360 transcription by RNA polymerase I IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 706 742
IPR001680 WD40_repeat 180 211
IPR001680 WD40_repeat 669 700
IPR001680 WD40_repeat 551 584
IPR001680 WD40_repeat 747 783
IPR001680 WD40_repeat 789 826
IPR013934 SSU_processome_Utp13 847 986
No external refs found!