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  5. lcl|VRMN01000025.1_cds_KAA8490491.1_2853

lcl|VRMN01000025.1_cds_KAA8490491.1_2853 (KAA8490491)


Aliases : KAA8490491

Description : Methionine synthase


Gene families : OG_01_0001464 (OrthoFinder) Phylogenetic Tree(s): OG0001464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000025.1_cds_KAA8490491.1_2853
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Sro803_g204810.1 Contig386.g5195 Probable methionine synthase 0.01 OrthoFinder
Sro803_g204830.1 Contig386.g5197 Probable methionine synthase 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008705 methionine synthase activity IEA Interproscan
BP GO:0009086 methionine biosynthetic process IEA Interproscan
MF GO:0031419 cobalamin binding IEA Interproscan
BP GO:0042558 pteridine-containing compound metabolic process IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004071 aspartate-ammonia ligase activity IEP Enrichment
MF GO:0004399 histidinol dehydrogenase activity IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006528 asparagine metabolic process IEP Enrichment
BP GO:0006529 asparagine biosynthetic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR006158 Cobalamin-bd 918 1011
IPR000489 Pterin-binding_dom 514 752
IPR004223 VitB12-dep_Met_synth_activ_dom 1109 1388
IPR003759 Cbl-bd_cap 813 886
IPR003726 HCY_dom 166 477
No external refs found!