1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000021.1_cds_KAA8490624.1_5723

lcl|VRMN01000021.1_cds_KAA8490624.1_5723 (KAA8490624)


Aliases : KAA8490624

Description : Transposon Ty1-GR2 Gag-Pol polyprotein


Gene families : OG_01_0001103 (OrthoFinder) Phylogenetic Tree(s): OG0001103_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000021.1_cds_KAA8490624.1_5723
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000004.1_cds_KAA8494733.1_3263 KAA8494733 Retrovirus-related Pol polyprotein from transposon 0.08 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494243.1_4107 KAA8494243 Hypothetical protein 0.18 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493479.1_4241 KAA8493479 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493483.1_4245 KAA8493483 Transposon Ty1-BL Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493209.1_9510 KAA8493209 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.25 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493429.1_9730 KAA8493429 Hypothetical protein 0.18 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491013.1_9770 KAA8491013 Hypothetical protein 0.12 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490783.1_6039 KAA8490783 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490669.1_4711 KAA8490669 Hypothetical protein 0.1 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490613.1_5712 KAA8490613 Hypothetical protein 0.18 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490614.1_5713 KAA8490614 Hypothetical protein 0.1 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490576.1_6049 KAA8490576 Copia protein 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 65 287
No external refs found!