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  5. lcl|VRMN01000019.1_cds_KAA8490764.1_6020

lcl|VRMN01000019.1_cds_KAA8490764.1_6020 (KAA8490764)


Aliases : KAA8490764

Description : DNA polymerase alpha catalytic subunit


Gene families : OG_01_0002710 (OrthoFinder) Phylogenetic Tree(s): OG0002710_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000019.1_cds_KAA8490764.1_6020
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000237.42 tig00000237_g20491.t1 Cell cycle.interphase.DNA replication.elongation.DNA... 0.05 OrthoFinder
Cre04.g214350 30791491 Cell cycle.interphase.DNA replication.elongation.DNA... 0.08 OrthoFinder
Cz12g08090.t1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.06 OrthoFinder
EOD27476 No alias DNA polymerase alpha subunit 1 [Ensembl]. 0.04 OrthoFinder
OT_08G00710.1 No alias DNA polymerase alpha catalytic subunit, N-terminal... 0.08 OrthoFinder
PTI_00G03100.1 No alias DNA-directed DNA polymerase, family B, exonuclease... 0.05 OrthoFinder
Sro49_g028720.1 Contig2054.g17622 DNA polymerase alpha catalytic subunit (Fragment) 0.06 OrthoFinder
Transcript_contig_54971 54971 DNA-directed DNA polymerase, family B, exonuclease... 0.05 OrthoFinder
Vocar.0025s0165.1 32898389 DNA-directed DNA polymerase, family B, multifunctional... 0.05 OrthoFinder
XM_002502979.1 MICPUN_59630, 59630 Zinc finger, DNA-directed DNA polymerase, family B,... 0.02 OrthoFinder
lcl|BLLF01000259.1_cds_GFH09747.1_4224 HaLaN_04946, GFH09747 DNA polymerase 0.05 OrthoFinder
lcl|BLLF01000259.1_cds_GFH09748.1_4225 HaLaN_04947, GFH09748 DNA-directed DNA polymerase, family B, exonuclease... 0.05 OrthoFinder
lcl|BLLF01000259.1_cds_GFH09749.1_4226 HaLaN_04948, GFH09749 DNA polymerase 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003887 DNA-directed DNA polymerase activity IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003713 transcription coactivator activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0004150 dihydroneopterin aldolase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Enrichment
MF GO:0016805 dipeptidase activity IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019207 kinase regulator activity IEP Enrichment
MF GO:0019887 protein kinase regulator activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0032780 negative regulation of ATPase activity IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043462 regulation of ATPase activity IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051095 regulation of helicase activity IEP Enrichment
BP GO:0051097 negative regulation of helicase activity IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1905462 regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905774 regulation of DNA helicase activity IEP Enrichment
BP GO:1905775 negative regulation of DNA helicase activity IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001251 negative regulation of chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR006133 DNA-dir_DNA_pol_B_exonuc 551 827
IPR024647 DNA_pol_a_cat_su_N 14 70
IPR015088 Znf_DNA-dir_DNA_pol_B_alpha 1443 1620
IPR006134 DNA-dir_DNA_pol_B_multi_dom 908 1396
No external refs found!