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  5. lcl|VRMN01000018.1_cds_KAA8490863.1_5635

lcl|VRMN01000018.1_cds_KAA8490863.1_5635 (KAA8490863)


Aliases : KAA8490863

Description : E3 ubiquitin-protein ligase SDIR1


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000018.1_cds_KAA8490863.1_5635
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000842.16 tig00000842_g4836.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00020934.54 tig00020934_g16122.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cz10g28200.t1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
EOD13723 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
EOD34657 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
PTI_09G00300.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Sro117_g057280.1 Contig3937.g30172 Protein ligase Arkadia 0.01 OrthoFinder
Sro488_g153170.1 Contig4435.g33284 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
Sro492_g153770.1 Contig2481.g20303 Protein ligase ZNRF3 0.01 OrthoFinder
Sro66_g037140.1 Contig399.g5384 Protein ligase RNF12 0.02 OrthoFinder
SymbC1.scaffold2841.1 2841.1 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
TP07G01800.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Transcript_contig_55456 55456 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
Vocar.0001s0398.1 32884606 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Vocar.0006s0216.1 32894307 Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492115.1_5298 KAA8492115 E3 ubiquitin-protein ligase SDIR1 0.07 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491049.1_9806 KAA8491049 E3 ubiquitin-protein ligase 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003964 RNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005672 transcription factor TFIIA complex IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 325 367
No external refs found!