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  5. lcl|VRMN01000017.1_cds_KAA8491000.1_6203

lcl|VRMN01000017.1_cds_KAA8491000.1_6203 (KAA8491000)


Aliases : KAA8491000

Description : Retrotransposon-derived protein PEG10


Gene families : OG_01_0002362 (OrthoFinder) Phylogenetic Tree(s): OG0002362_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000017.1_cds_KAA8491000.1_6203
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497775.1_6728 KAA8497775 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497912.1_6865 KAA8497912 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498656.1_7609 KAA8498656 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498880.1_7833 KAA8498880 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499511.1_8464 KAA8499511 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8500083.1_9036 KAA8500083 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.06 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496291.1_20 KAA8496291 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.07 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497459.1_1188 KAA8497459 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.06 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495230.1_1228 KAA8495230 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.08 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495710.1_1708 KAA8495710 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494533.1_3063 KAA8494533 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.08 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494541.1_3071 KAA8494541 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.08 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493321.1_9622 KAA8493321 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.08 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492323.1_5506 KAA8492323 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491888.1_4896 KAA8491888 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.07 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491901.1_4909 KAA8491901 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.08 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491989.1_4997 KAA8491989 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.08 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491560.1_6370 KAA8491560 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.08 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491271.1_2272 KAA8491271 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.08 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491286.1_2287 KAA8491286 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 123 211
IPR001878 Znf_CCHC 291 307
No external refs found!