lcl|VRMN01000014.1_cds_KAA8491318.1_2319 (KAA8491318)

Aliases : KAA8491318

Description : Copia protein

Gene families : OG_01_0000023 (OrthoFinder) Phylogenetic Tree(s): OG0000023_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000014.1_cds_KAA8491318.1_2319
Cluster	HCCA: Cluster_12

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8499574.1_8527	KAA8499574	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.02	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499576.1_8529	KAA8499576	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.02	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496538.1_267	KAA8496538	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.1	OrthoFinder
lcl\|VRMN01000009.1_cds_KAA8492487.1_9180	KAA8492487	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.02	OrthoFinder
lcl\|VRMN01000011.1_cds_KAA8491886.1_4894	KAA8491886	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.02	OrthoFinder
lcl\|VRMN01000031.1_cds_KAA8490360.1_5750	KAA8490360	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.05	OrthoFinder
lcl\|VRMN01000031.1_cds_KAA8490368.1_5758	KAA8490368	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
MF	GO:0009982	pseudouridine synthase activity	IEP	Enrichment
MF	GO:0016853	isomerase activity	IEP	Enrichment
MF	GO:0016866	intramolecular transferase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR025724	GAG-pre-integrase_dom	498	551

External Links

No external refs found!