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  5. lcl|VRMN01000011.1_cds_KAA8491827.1_4835

lcl|VRMN01000011.1_cds_KAA8491827.1_4835 (KAA8491827)


Aliases : KAA8491827

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000011.1_cds_KAA8491827.1_4835
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
Cz07g09140.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz18g14030.t1 No alias Reverse transcriptase domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000958.1_cds_GFH16187.1_10664 HaLaN_12562, GFH16187 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497670.1_6623 KAA8497670 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498182.1_7135 KAA8498182 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498457.1_7410 KAA8498457 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498720.1_7673 KAA8498720 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498877.1_7830 KAA8498877 Transposon Ty3-G Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499405.1_8358 KAA8499405 Retrotransposon-derived protein PEG10 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499550.1_8503 KAA8499550 Retrovirus-related Pol polyprotein from transposon 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499909.1_8862 KAA8499909 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497004.1_733 KAA8497004 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495320.1_1318 KAA8495320 Retrotransposon-derived protein PEG10 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495820.1_1818 KAA8495820 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495846.1_1844 KAA8495846 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494624.1_3154 KAA8494624 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494670.1_3200 KAA8494670 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494765.1_3295 KAA8494765 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493809.1_4571 KAA8493809 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493461.1_9762 KAA8493461 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492702.1_9395 KAA8492702 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491585.1_5053 KAA8491585 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491590.1_5058 KAA8491590 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491407.1_2408 KAA8491407 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491014.1_9771 KAA8491014 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490791.1_5563 KAA8490791 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490612.1_5711 KAA8490612 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490532.1_5898 KAA8490532 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000024.1_cds_KAA8490521.1_4671 KAA8490521 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490464.1_6410 KAA8490464 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000028.1_cds_KAA8490418.1_5041 KAA8490418 Transposon Ty3-G Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000030.1_cds_KAA8490384.1_3741 KAA8490384 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000030.1_cds_KAA8490385.1_3742 KAA8490385 Transposon Ty3-G Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000041.1_cds_KAA8490241.1_5205 KAA8490241 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490236.1_6103 KAA8490236 Transposon Ty3-G Gag-Pol polyprotein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004806 triglyceride lipase activity IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
InterPro domains Description Start Stop
IPR000477 RT_dom 553 711
IPR001584 Integrase_cat-core 1064 1173
IPR001878 Znf_CCHC 231 247
IPR041588 Integrase_H2C2 985 1043
IPR005162 Retrotrans_gag_dom 67 160
IPR041373 RT_RNaseH 805 904
No external refs found!