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  5. lcl|VRMN01000010.1_cds_KAA8492265.1_5448

lcl|VRMN01000010.1_cds_KAA8492265.1_5448 (KAA8492265)


Aliases : KAA8492265

Description : Putative SWI/SNF-related matrix-associated actin-dependent regulator


Gene families : OG_01_0000210 (OrthoFinder) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000010.1_cds_KAA8492265.1_5448
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021014.10 tig00021014_g17092.t1 DNA repair protein RAD5A OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00021293.7 tig00021293_g20000.t1 No description available 0.02 OrthoFinder
Cz06g35010.t1 No alias Helicase, C-terminal; Zinc finger, C3HC4 type (RING... 0.03 OrthoFinder
Cz10g28060.t1 No alias SNF2-related, N-terminal domain; Zinc finger, C3HC4 type... 0.02 OrthoFinder
Dusal.0008s00002.1 33198891 SNF2-related, N-terminal domain; Zinc finger, C3HC4 type... 0.02 OrthoFinder
Dusal.0160s00016.1 33188321 RING-type zinc-finger, LisH dimerisation motif;... 0.02 OrthoFinder
Dusal.0215s00007.1 33185751 Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.04 OrthoFinder
EOD35283 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.04 OrthoFinder
Sro298_g110990.1 Contig4399.g33030 Regulator of chromatin subfamily A member 3-like 1 0.01 OrthoFinder
lcl|LHPG02000015.1_cds_PRW33823.1_3045 PRW33823 SNF2 domain-containing 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
MF GO:0016603 glutaminyl-peptide cyclotransferase activity IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
BP GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase IEP Enrichment
BP GO:0018199 peptidyl-glutamine modification IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0061630 ubiquitin protein ligase activity IEP Enrichment
MF GO:0061659 ubiquitin-like protein ligase activity IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 801 911
IPR000330 SNF2_N 349 636
No external refs found!