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  5. lcl|VRMN01000010.1_cds_KAA8492219.1_5402

lcl|VRMN01000010.1_cds_KAA8492219.1_5402 (KAA8492219)


Aliases : KAA8492219

Description : Histone H2A.V


Gene families : OG_01_0000046 (OrthoFinder) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000010.1_cds_KAA8492219.1_5402
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001085.4 tig00001085_g6945.t1 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre06.g264750 30778682, HTA14 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre06.g264950 30779952 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre06.g265350 30779523 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre06.g266700 30779158 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre06.g268050 30779224, HTA10 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre06.g268300 30778781, HTA9 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre06.g271350 30779391 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre06.g273900 30779778 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre06.g274200 30778751 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre06.g274800 30780111, HTA26 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre06.g275850 30779335 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre06.g276500 30778822, HTA23 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre06.g276950 30778754, HTA24 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre12.g504500 30793209 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre12.g504750 30792225 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre12.g505550 30793129 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre12.g506250 30793152, HTA18 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre13.g567700 30783996 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder
Cre13.g570100 30784159, HTA2 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre13.g590800 30783997, HTA37 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre13.g591150 30784726, HTA38 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
Cre17.g708550 30781878, HTA20 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre17.g709200 30782358 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre17.g710400 30782701, HTA19 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cre17.g711700 30781638, HTA5 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre17.g713400 30781819 Chromatin organisation.histones.H2A-type histone 0.07 OrthoFinder
Cre17.g714500 30782017, HTA1 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder
Cz02g02050.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.05 OrthoFinder
Cz05g04180.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.06 OrthoFinder
Cz07g08180.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.05 OrthoFinder
Cz08g27130.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.05 OrthoFinder
Cz18g11100.t1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.06 OrthoFinder
Dusal.0002s00036.1 33187941 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
Dusal.0093s00031.1 33185335 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
Dusal.0093s00037.1 33185342 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
Dusal.0152s00023.1 33186201 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.05 OrthoFinder
Dusal.0165s00017.1 33193347 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.04 OrthoFinder
Dusal.0322s00015.1 33197808 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.05 OrthoFinder
Dusal.0688s00003.1 33202688 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.05 OrthoFinder
Dusal.0806s00004.1 33190343 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
EOD08304 No alias Putative histone H2A [Ensembl]. 0.03 OrthoFinder
EOD11956 No alias Putative histone H2A [Ensembl]. 0.04 OrthoFinder
EOD14007 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.02 OrthoFinder
EOD22956 No alias Putative histone H2A [Ensembl]. 0.02 OrthoFinder
EOD22963 No alias Putative histone H2A [Ensembl]. 0.02 OrthoFinder
OT_02G00110.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
OT_08G01910.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.04 OrthoFinder
OT_12G00910.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
OT_16G01100.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.04 OrthoFinder
PTI_06G01940.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.03 OrthoFinder
PTI_06G02110.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.02 OrthoFinder
Sro120_g058300.1 Contig2411.g19708 H2A.z 0.02 OrthoFinder
Sro311_g114190.1 Contig909.g9534 Histone H2A 0.02 OrthoFinder
Sro392_g133380.1 Contig4514.g33844 Histone H2A 0.04 OrthoFinder
Sro470_g149450.1 Contig850.g9339 Histone H2A 0.02 OrthoFinder
TP07G03180.1 No alias Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.02 OrthoFinder
TP14G03370.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.03 OrthoFinder
Vocar.0002s0391.1 32890987 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
Vocar.0027s0147.1 32887249 Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.02 OrthoFinder
XM_002501356.1 MICPUN_81242, 81242 Histone H2A 0.02 OrthoFinder
XM_002503584.1 MICPUN_83469, 83469 Histone H2A 0.02 OrthoFinder
XM_003054928.1 MicpuC2_12375, 12375 Histone H2A 0.04 OrthoFinder
XM_003058838.1 MicpuC2_17393, 17393 Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.04 OrthoFinder
XM_003063174.1 MicpuC2_11887, 11887 Histone H2A, C-terminal domain; Histone H2A/H2B/H3... 0.04 OrthoFinder
lcl|BLLF01000678.1_cds_GFH14026.1_8503 HaLaN_09999, GFH14026 Histone H2A 0.02 OrthoFinder
lcl|BLLF01001229.1_cds_GFH17968.1_12445 HaLaN_14697, GFH17968 Histone H2A 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57339.1_9052 PRW57339 Histone H2A 0.04 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32875.1_3737 PRW32875 Histone H2A 0.02 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33066.1_3814 PRW33066 Histone H2A 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0006754 ATP biosynthetic process IEP Enrichment
BP GO:0008156 negative regulation of DNA replication IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009141 nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009150 purine ribonucleotide metabolic process IEP Enrichment
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009259 ribonucleotide metabolic process IEP Enrichment
BP GO:0009260 ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Enrichment
BP GO:0015986 ATP synthesis coupled proton transport IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0019693 ribose phosphate metabolic process IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Enrichment
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
BP GO:0046390 ribose phosphate biosynthetic process IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
BP GO:0048478 replication fork protection IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 33 112
IPR032454 Histone_H2A_C 113 146
No external refs found!