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  5. lcl|VRMN01000010.1_cds_KAA8492149.1_5332

lcl|VRMN01000010.1_cds_KAA8492149.1_5332 (KAA8492149)


Aliases : KAA8492149

Description : Chromodomain-helicase-DNA-binding protein 6


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000010.1_cds_KAA8492149.1_5332
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020848.66 tig00020848_g14596.t1 Probable helicase CHR10 OS=Arabidopsis thaliana 0.01 OrthoFinder
Dusal.0024s00040.1 33202173 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
EOD27153 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
PTI_02G06230.1 No alias Bromodomain; Helicase, C-terminal; Snf2, ATP coupling... 0.02 OrthoFinder
PTI_10G02350.1 No alias Chromo domain; SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
Sro19_g013190.1 Contig446.g5983 CHD3-type chromatin-remodeling factor 0.01 OrthoFinder
SymbC1.scaffold1732.5 1732.5 SNF2-related, N-terminal domain; Helicase, C-terminal... 0.02 OrthoFinder
XM_003061151.1 MicpuC2_60694, 60694 SNF2 super family 0.01 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58677.1_7830 PRW58677 Chromatin structure-remodeling complex SYD-like isoform X1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
CC GO:0000159 protein phosphatase type 2A complex IEP Enrichment
MF GO:0003951 NAD+ kinase activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006739 NADP metabolic process IEP Enrichment
BP GO:0006741 NADP biosynthetic process IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006906 vesicle fusion IEP Enrichment
BP GO:0007030 Golgi organization IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Enrichment
CC GO:0008287 protein serine/threonine phosphatase complex IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
BP GO:0016050 vesicle organization IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Enrichment
BP GO:0019362 pyridine nucleotide metabolic process IEP Enrichment
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019888 protein phosphatase regulator activity IEP Enrichment
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Enrichment
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Enrichment
BP GO:0042546 cell wall biogenesis IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Enrichment
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Enrichment
BP GO:0048284 organelle fusion IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
BP GO:0061025 membrane fusion IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0071554 cell wall organization or biogenesis IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
BP GO:0072524 pyridine-containing compound metabolic process IEP Enrichment
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Enrichment
BP GO:0080134 regulation of response to stress IEP Enrichment
BP GO:0090174 organelle membrane fusion IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1901031 regulation of response to reactive oxygen species IEP Enrichment
BP GO:1902882 regulation of response to oxidative stress IEP Enrichment
CC GO:1903293 phosphatase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 451 722
IPR003888 FYrich_N 2660 2692
IPR003889 FYrich_C 2718 2794
IPR023780 Chromo_domain 356 395
IPR023780 Chromo_domain 197 233
IPR001650 Helicase_C 761 872
No external refs found!