Aliases : KAA8492942
Description : TATA-binding protein-associated factor
Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: lcl|VRMN01000008.1_cds_KAA8492942.1_2678 | |
Cluster | HCCA: Cluster_42 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00000217.25 | tig00000217_g19158.t1 | Chromatin structure-remodeling complex protein SYD... | 0.02 | OrthoFinder | |
Cpa|evm.model.tig00000983.26 | tig00000983_g5915.t1 | RNA biosynthesis.RNA polymerase II-dependent... | 0.02 | OrthoFinder | |
Cpa|evm.model.tig00021275.25 | tig00021275_g19885.t1 | Probable chromatin-remodeling complex ATPase chain... | 0.03 | OrthoFinder | |
Cre03.g158550 | 30787160 | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | OrthoFinder | |
Cre03.g179300 | 30786668 | RNA biosynthesis.RNA polymerase II-dependent... | 0.01 | OrthoFinder | |
Cre08.g377200 | 30773522 | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | OrthoFinder | |
Cz19g07040.t1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.02 | OrthoFinder | |
Dusal.0024s00040.1 | 33202173 | SNF2-related, N-terminal domain [Interproscan]. | 0.03 | OrthoFinder | |
EOD36957 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.01 | OrthoFinder | |
PTI_10G00070.1 | No alias | Helicase, C-terminal; High mobility group box domain;... | 0.02 | OrthoFinder | |
PTI_10G02350.1 | No alias | Chromo domain; SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
PTI_12G00850.1 | No alias | Helicase, C-terminal; High mobility group box domain;... | 0.02 | OrthoFinder | |
PTI_24G01280.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
Sro19_g013190.1 | Contig446.g5983 | CHD3-type chromatin-remodeling factor | 0.01 | OrthoFinder | |
Sro272_g104840.1 | Contig2144.g18025 | Chromodomain-helicase-DNA-binding protein | 0.02 | OrthoFinder | |
TP07G00550.1 | No alias | SNF2-related, N-terminal domain; Helicase, C-terminal... | 0.02 | OrthoFinder | |
TP11G02170.1 | No alias | SNF2-related, N-terminal domain; Chromo domain;... | 0.01 | OrthoFinder | |
Vocar.0011s0087.1 | 32895477 | Domain of unknown function DUF3535; Helicase,... | 0.02 | OrthoFinder | |
Vocar.0019s0100.1 | 32892722 | Chromo domain; Helicase, C-terminal; SNF2-related,... | 0.02 | OrthoFinder | |
XM_002499830.1 | MICPUN_56506, 56506 | SNF2 super family | 0.02 | OrthoFinder | |
XM_002502289.1 | MICPUN_58978, 58978 | SNF2 super family | 0.02 | OrthoFinder | |
XM_002509111.1 | MICPUN_62843, 62843 | SNF2 super family | 0.01 | OrthoFinder | |
lcl|LHPG02000002.1_cds_PRW60614.1_4411 | PRW60614 | ATP-dependent helicase BRM | 0.02 | OrthoFinder | |
lcl|LHPG02000006.1_cds_PRW57711.1_8458 | PRW57711 | CHROMATIN REMODELING 5 isoform A | 0.04 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
MF | GO:0003677 | DNA binding | IEP | Enrichment |
MF | GO:0003723 | RNA binding | IEP | Enrichment |
MF | GO:0004177 | aminopeptidase activity | IEP | Enrichment |
MF | GO:0005543 | phospholipid binding | IEP | Enrichment |
CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006281 | DNA repair | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006904 | vesicle docking involved in exocytosis | IEP | Enrichment |
BP | GO:0006950 | response to stress | IEP | Enrichment |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Enrichment |
MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Enrichment |
MF | GO:0008289 | lipid binding | IEP | Enrichment |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Enrichment |
BP | GO:0009966 | regulation of signal transduction | IEP | Enrichment |
BP | GO:0010646 | regulation of cell communication | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
MF | GO:0016853 | isomerase activity | IEP | Enrichment |
MF | GO:0016866 | intramolecular transferase activity | IEP | Enrichment |
MF | GO:0016868 | intramolecular transferase activity, phosphotransferases | IEP | Enrichment |
BP | GO:0022406 | membrane docking | IEP | Enrichment |
BP | GO:0023051 | regulation of signaling | IEP | Enrichment |
MF | GO:0030145 | manganese ion binding | IEP | Enrichment |
BP | GO:0032012 | regulation of ARF protein signal transduction | IEP | Enrichment |
BP | GO:0033554 | cellular response to stress | IEP | Enrichment |
CC | GO:0034457 | Mpp10 complex | IEP | Enrichment |
BP | GO:0046578 | regulation of Ras protein signal transduction | IEP | Enrichment |
BP | GO:0048278 | vesicle docking | IEP | Enrichment |
BP | GO:0048583 | regulation of response to stimulus | IEP | Enrichment |
BP | GO:0050794 | regulation of cellular process | IEP | Enrichment |
BP | GO:0050896 | response to stimulus | IEP | Enrichment |
BP | GO:0051056 | regulation of small GTPase mediated signal transduction | IEP | Enrichment |
BP | GO:0051640 | organelle localization | IEP | Enrichment |
BP | GO:0051716 | cellular response to stimulus | IEP | Enrichment |
BP | GO:0140029 | exocytic process | IEP | Enrichment |
BP | GO:0140056 | organelle localization by membrane tethering | IEP | Enrichment |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
BP | GO:1902531 | regulation of intracellular signal transduction | IEP | Enrichment |
No external refs found! |