1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000008.1_cds_KAA8492805.1_2541

lcl|VRMN01000008.1_cds_KAA8492805.1_2541 (KAA8492805)


Aliases : KAA8492805

Description : ATP-dependent RNA helicase DDX54


Gene families : OG_01_0002520 (OrthoFinder) Phylogenetic Tree(s): OG0002520_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000008.1_cds_KAA8492805.1_2541
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.32 tig00022075_g23594.t1 Putative DEAD-box ATP-dependent RNA helicase 29... 0.03 OrthoFinder
Cre12.g513701 30791778 DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.07 OrthoFinder
Cz05g10330.t1 No alias Helicase, C-terminal; DBP10, C-terminal; DEAD/DEAH box... 0.08 OrthoFinder
Dusal.0175s00005.1 33199720 DBP10, C-terminal; Helicase, C-terminal; DEAD/DEAH box... 0.03 OrthoFinder
EOD14476 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.05 OrthoFinder
OT_06G03920.1 No alias Helicase, C-terminal; DBP10, C-terminal; DEAD/DEAH box... 0.07 OrthoFinder
PTI_06G03220.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
Sro1505_g278170.1 Contig474.g6439 Dependent RNA helicase 0.07 OrthoFinder
Transcript_contig_54936 54936 Helicase, C-terminal; DBP10, C-terminal; DEAD/DEAH box... 0.04 OrthoFinder
XM_002499996.1 MICPUN_78680, 78680 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
XM_003057837.1 MicpuC2_16058, 16058 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
lcl|BLLF01000359.1_cds_GFH10929.1_5406 HaLaN_06335, GFH10929 DEAD-box ATP-dependent RNA helicase 29 0.02 OrthoFinder
lcl|BLLF01002986.1_cds_GFH26001.1_20478 HaLaN_24070, GFH26001 DEAD-box ATP-dependent RNA helicase 29 0.02 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33126.1_3489 PRW33126 DEAD-box ATP-dependent RNA helicase 29 isoform X1 isoform A 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0004602 glutathione peroxidase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034227 tRNA thio-modification IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 134 325
IPR001650 Helicase_C 447 518
No external refs found!