lcl|VRMN01000008.1_cds_KAA8492723.1_2459 (KAA8492723)

Aliases : KAA8492723

Description : Transposon Ty3-I Gag-Pol polyprotein

Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000008.1_cds_KAA8492723.1_2459
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
Cre10.g446600	30790904	No description available	0.02	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8497670.1_6623	KAA8497670	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498182.1_7135	KAA8498182	Hypothetical protein	0.07	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498720.1_7673	KAA8498720	Transposon Ty3-I Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499405.1_8358	KAA8499405	Retrotransposon-derived protein PEG10	0.05	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499550.1_8503	KAA8499550	Retrovirus-related Pol polyprotein from transposon	0.05	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494765.1_3295	KAA8494765	Transposon Ty3-I Gag-Pol polyprotein	0.06	OrthoFinder
lcl\|VRMN01000005.1_cds_KAA8493898.1_3762	KAA8493898	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000009.1_cds_KAA8492702.1_9395	KAA8492702	Transposon Ty3-I Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491407.1_2408	KAA8491407	Transposon Ty3-I Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000016.1_cds_KAA8491014.1_9771	KAA8491014	Transposon Ty3-I Gag-Pol polyprotein	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Enrichment
BP	GO:0002098	tRNA wobble uridine modification	IEP	Enrichment
MF	GO:0004672	protein kinase activity	IEP	Enrichment
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Enrichment
BP	GO:0006400	tRNA modification	IEP	Enrichment
BP	GO:0006464	cellular protein modification process	IEP	Enrichment
BP	GO:0006468	protein phosphorylation	IEP	Enrichment
BP	GO:0006793	phosphorus metabolic process	IEP	Enrichment
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Enrichment
BP	GO:0008033	tRNA processing	IEP	Enrichment
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Enrichment
MF	GO:0008175	tRNA methyltransferase activity	IEP	Enrichment
MF	GO:0008176	tRNA (guanine-N7-)-methyltransferase activity	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
MF	GO:0015276	ligand-gated ion channel activity	IEP	Enrichment
MF	GO:0016301	kinase activity	IEP	Enrichment
BP	GO:0016310	phosphorylation	IEP	Enrichment
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Enrichment
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Enrichment
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Enrichment
MF	GO:0016987	sigma factor activity	IEP	Enrichment
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Enrichment
MF	GO:0022834	ligand-gated channel activity	IEP	Enrichment
CC	GO:0033588	elongator holoenzyme complex	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0036211	protein modification process	IEP	Enrichment
BP	GO:0043412	macromolecule modification	IEP	Enrichment
MF	GO:0043565	sequence-specific DNA binding	IEP	Enrichment
BP	GO:0051252	regulation of RNA metabolic process	IEP	Enrichment
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Enrichment
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Enrichment
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR041373	RT_RNaseH	1105	1146
IPR005162	Retrotrans_gag_dom	329	422
IPR005162	Retrotrans_gag_dom	123	211
IPR001878	Znf_CCHC	493	509
IPR000477	RT_dom	837	995
IPR041588	Integrase_H2C2	1227	1285
IPR001584	Integrase_cat-core	1306	1415

External Links

No external refs found!

lcl|VRMN01000008.1_cds_KAA8492723.1_2459 (KAA8492723)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation