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  5. lcl|VRMN01000007.1_cds_KAA8493371.1_9672

lcl|VRMN01000007.1_cds_KAA8493371.1_9672 (KAA8493371)


Aliases : KAA8493371

Description : 50S ribosomal protein L7/L12


Gene families : OG_01_0000959 (OrthoFinder) Phylogenetic Tree(s): OG0000959_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000007.1_cds_KAA8493371.1_9672
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Dusal.0015s00043.1 33190941 Ribosomal protein L7/L12, C-terminal; Ribosomal protein... 0.02 OrthoFinder
OT_16G00410.1 No alias Ribosomal protein L7/L12, C-terminal [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold17773.1 17773.1 Ribosomal protein L7/L12, C-terminal; RNA polymerase,... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0008375 acetylglucosaminyltransferase activity IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009235 cobalamin metabolic process IEP Enrichment
BP GO:0009236 cobalamin biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016852 sirohydrochlorin cobaltochelatase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0071569 protein ufmylation IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
InterPro domains Description Start Stop
IPR013823 Ribosomal_L7/L12_C 186 252
No external refs found!