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Aliases : KAA8493286
Description : RNA-binding protein 28
Gene families : OG_01_0003296 (OrthoFinder) Phylogenetic Tree(s): OG0003296_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: lcl|VRMN01000007.1_cds_KAA8493286.1_9587 | |
| Cluster | HCCA: Cluster_26 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000144.75 | tig00000144_g9066.t1 | No description available | 0.04 | OrthoFinder | |
| Cre02.g104650 | 30785421 | No description available | 0.08 | OrthoFinder | |
| Cz10g04070.t1 | No alias | RNA recognition motif domain [Interproscan]. | 0.05 | OrthoFinder | |
| OT_10G02900.1 | No alias | RNA recognition motif domain [Interproscan]. | 0.05 | OrthoFinder | |
| PTI_23G00340.1 | No alias | RNA recognition motif domain [Interproscan]. | 0.11 | OrthoFinder | |
| Sro251_g099260.1 | Contig687.g8006 | RNA-binding protein 28 | 0.03 | OrthoFinder | |
| Transcript_contig_57849 | 57849 | RNA recognition motif domain [Interproscan]. | 0.11 | OrthoFinder | |
| Transcript_contig_58008 | 58008 | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
| Vocar.0020s0164.1 | 32886730 | RNA recognition motif domain [Interproscan]. | 0.03 | OrthoFinder | |
| XM_002503386.1 | MICPUN_101277, 101277 | RNA recognition motif domain [Interproscan]. | 0.1 | OrthoFinder | |
| XM_003055646.1 | MicpuC2_1653, 1653 | RNA recognition motif domain [Interproscan]. | 0.05 | OrthoFinder | |
| lcl|BLLF01000077.1_cds_GFH07148.1_1625 | HaLaN_01909, GFH07148 | Hypothetical protein | 0.03 | OrthoFinder | |
| lcl|BLLF01000077.1_cds_GFH07149.1_1626 | HaLaN_01910, GFH07149 | RNA recognition motif domain [Interproscan]. | 0.05 | OrthoFinder | |
| lcl|LHPG02000007.1_cds_PRW57348.1_8998 | PRW57348 | RNA-binding 28 isoform B | 0.09 | OrthoFinder | |
| lcl|LHPG02000007.1_cds_PRW57349.1_8999 | PRW57349 | RNA-binding 28 isoform A | 0.09 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0004055 | argininosuccinate synthase activity | IEP | Enrichment |
| MF | GO:0004749 | ribose phosphate diphosphokinase activity | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| MF | GO:0005525 | GTP binding | IEP | Enrichment |
| CC | GO:0005730 | nucleolus | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006525 | arginine metabolic process | IEP | Enrichment |
| BP | GO:0006526 | arginine biosynthetic process | IEP | Enrichment |
| BP | GO:0006777 | Mo-molybdopterin cofactor biosynthetic process | IEP | Enrichment |
| BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | Enrichment |
| BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | Enrichment |
| MF | GO:0015095 | magnesium ion transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0015693 | magnesium ion transport | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| MF | GO:0016778 | diphosphotransferase activity | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
| CC | GO:0019008 | molybdopterin synthase complex | IEP | Enrichment |
| BP | GO:0019637 | organophosphate metabolic process | IEP | Enrichment |
| BP | GO:0019720 | Mo-molybdopterin cofactor metabolic process | IEP | Enrichment |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| CC | GO:0030684 | preribosome | IEP | Enrichment |
| CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| BP | GO:0043545 | molybdopterin cofactor metabolic process | IEP | Enrichment |
| BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
| BP | GO:0051189 | prosthetic group metabolic process | IEP | Enrichment |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | Enrichment |
| MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Enrichment |
| MF | GO:0051540 | metal cluster binding | IEP | Enrichment |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Enrichment |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
| No external refs found! |